Release History

Version 0.1.3 (30/03/2026)

  • update Tutorial notebook, add HCC_P1T_Train_Impute.ipynb

  • add the dataset.HCCP1T() function for HCCP1T dataset

  • update FineST more clean

  • update Tutorial notebook

  • update demo to use script run FineST

Version 0.1.2 (20/05/2025)

  • update LR_gene in adata_LR() to suppoet L-R-TF-TG analysis

  • Update plottings.py and processData.py

Version 0.1.0 (03/03/2025)

  • update some plottings function

  • update the tutorial notebook

  • revised some code, to fit Visium or Visium HD

Version 0.0.9 (19/12/2024)

  • delete ‘from .downloadData import *’

Version 0.0.8 (18/12/2024)

  • Replace ‘CellContrastModel’ with ‘FineSTModel’ in FineST/model.py and demo/FineST_train_infer.py

  • Adjust ‘dataset_class’ with ‘dataset’ in image_coord_merge function

  • Add imputation for single-nuclei level gene epxr

  • Adjust the title size in README.rst

  • Especially adjust Section 6 for NPC_Train_Impute.ipynb

Version 0.0.7 (17/12/2024)

  • Adjust plotting errors and demo for train and inder

Version 0.0.6 (16/12/2024)

  • Add plot and process function for VisiumHD data

Version 0.0.5 (14/11/2024)

  • Add position inerpolation for Visium data

Version 0.0.4 (12/11/2024)

  • Adjust functions of Model-Train-Test for Visium data

  • Adjust functions of LRI-CCC-Discovery for Visium data

Version 0.0.2 (31/10/2024)

  • Minor adjust of FineST

Version 0.0.1 (03/10/2024)

  • Alpha version of FineST released